this post was submitted on 22 Oct 2024
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Computational protein engineer here. Pretty good explanation. I wanted to add that just because we know that a protein's behavior changes depending on pH, it is still interesting to see what atom-level changes to the 3D structure are caused by the pH shift (e.g. so that we can better predict those changes on other proteins).
Thanks for the confirmation!
That was my source of confusion: finding out, how stuff works exactly is science. Even if we know the rough principle, the details might reveal some new things.